Toys R Us Commack had lots of the Red Leader X-Wing, as well as tons of the Silver Clone Trooper.
Target Commack North had a bunch of Anakin Secret Ceremony, Aayla Secura, Barris Offee, Ashla & Jempa, Yoda & Chian, Throne Room Duel Luke and Vader. They also had a few of Ultra Jabba, Jango, and Obi-Wan.
They did have a couple of the clearance vehicles, but my son didn't mention anything when he saw them, so we passed on them.
On a non-SW note, they did have the new Mattel Batman & Robin 2-pack that includes the formerly hard-to-find Battle Board Robin. We've been looking for that one since October last year when we got the Batmobile. Funny thing is that my son isn't even playing with it now... I guess he's a completist in some ways (he still wants us to buy him the new Thomas The Tank Engine toys, even though he doesn't even play with them any more...)